PUBLICATIONS

Previous Publications (before 2015)

Publications from our lab

Mapping cellular automaton to a drifting-diffusing particle
Statistical dynamics of spatial-order formation by communicating cells
Eduardo P. Olimpio, Yiteng Dang, and Hyun Youk
submitted ( Research article ) ( 2017 )
   arXiv: 1706.06481   
Positive feedbacks and controlling signal-range
Progress towards design principles of multicellular systems
Eduardo P. Olimpio, Diego R. Gomez-Alvarez, and Hyun Youk
in Systems Biology, Wiley Advanced Biotechnology ( Book chapter )
( March 2017 )
   arXiv: 1602.08526   
Positive feedbacks and controlling signal-range
Autocrine signaling and quorum sensing: Extreme ends of a common spectrum
Berkalp A. Doganer, Lawrence K. Q. Yan, and Hyun Youk
Trends in Cell Biology ( Review ) ( April 2016 )
   review (.pdf)       arXiv: 1602.06859       pubmed   
Molecular-level tuning of cellular autonomy controls the collective behaviors of cell populations
Théo Maire and Hyun Youk
Cell Systems ( Research Article - 1: 349-360) ( November 2015 )
   research article (.pdf)       article + supp. info. (.pdf)       arXiv: 1602.05558       pubmed   
   Preview by C. Ratzke & J. Gore: "Shaping the crowd: The social life of cells" (.pdf)       TU Delft News   
   Reviewers' comments & our response (.pdf)   
Positive feedbacks and controlling signal-range
A collective path toward regeneration
Théo Maire and Hyun Youk
Cell ( Preview - 161:195-196) ( April 2015 )
   preview (.pdf)       pubmed   
Positive feedbacks and controlling signal-range
IL-2 mediated multicellular bistability
Sending mixed messages for cell population control
Hyun Youk and Wendell A. Lim
Cell ( Preview - 158:973-975) ( August 2014 )
   preview (.pdf)       pubmed   
Secreting and sensing the same molecule allows cells to achieve versatile social behaviors
Hyun Youk and Wendell A. Lim
Science ( Research Article - 343:1242782) ( February 2014 )
   research article (.pdf)       supplementary material (.pdf)       pubmed   
   Perspective by Anna J. Lee & Lingchong You: "Cells listen to their inner voice" (.pdf)   
   Editor's choice in Science Signaling: "The message in the medium"   
   Synopsis by Faculty of 1000 (F1000 Prime)       Chemical & Engineering News: Highlight   
   SGD Blog: "Signaling in a crowd"   
Growth landscape formed by perception and import of glucose
bottom up hierarcy: secrete and sense
secrete and sense circuit
self vs neighbor communication
Altruistic defence
Hyun Youk and Alexander van Oudenaarden
Nature ( News & Views - 467:34-35 ) ( September 2010 )
   news & views (.pdf)       pubmed   
Imaging single mRNA molecules in yeast
Hyun Youk, Arjun Raj, and Alexander van Oudenaarden
Methods in Enzymology ( Book Chapter - 470:429 ) ( 2010 )
   book chapter (.pdf)       pubmed   
Phenomenological models in biological physics: Cell growth and pluripotency maintenance
Hyun Youk
Ph.D. Thesis in Physics, MIT ( June 2010 )
  Ph.D. Thesis (.pdf)      thesis @ MIT Libraries   
Growth landscape formed by perception and import of glucose in yeast
Hyun Youk and Alexander van Oudenaarden
Nature ( Research Article - 462:875-879 ) ( December 2009 )
  article (.pdf)      supplementary information (.pdf)      pubmed  
   Editor's summary of this work   
   Cell select: "How yeast knows when it is time to grow " (.pdf)  
E.coli
Hxt_strain_schematic
Single murine ESC - RNA FISH on Oct4
Optimal transporter equation
RNA FISH Probes - Schematic
Snowdrift game dynamics and facultative cheating in yeast
Jeff Gore, Hyun Youk, and Alexander van Oudenaarden
Nature ( Research Letter - 459:253-256 ) ( May 2009 )
cooperator vs cheater
  letter (.pdf)      supplementary information (.pdf)      pubmed  
  Editor's summary of this work  
Halfvortices in flat nanomagnets
Gia-Wei Chern, David Clarke, Hyun Youk, and Oleg Tchernyshyov
Quantum Magnetism ( Book chapter - pp35-48 ) ( 2008 )
  book chapter (.pdf)     arXiv: 1007.2158   
+1/2 vortex
-1/2 vortex
Composite domain walls in flat nanomagnets: The magnetostatic limit
Hyun Youk, Gia-Wei Chern, Kathleen Merit, Benjamin Oppenheimer, and Oleg Tchernyshyov
Journal of Applied Physics ( Research article - 99:08B101 ) ( 2006 )
  research article (.pdf)      arXiv: cond-mat/0508741   
vortices
smooth vortex
Topological defects in flat nanomagnets: The magnetostatic limit
Gia-Wei Chern, Hyun Youk, and Oleg Tchernyshyov
Journal of Applied Physics ( Research article - 99:08Q505 ) ( 2006 )
  research article (.pdf)      arXiv: cond-mat/0508740   
Condensation of magnons and spinons in a frustrated ladder
Jean-Baptiste Fouet, Frédéric Mila, David Clarke, Hyun Youk, Oleg Tchernyshyov, Paul Fendley, and R.M. Noack
Physical Review B ( Research article - 73:214405 ) ( 2006 )
  research article (.pdf)      arXiv: cond-mat/0603609   
frustrated ladder
The growth of ice crystals by molecular diffusion
Hyun Youk, Roland List, and Theophilus Ola
Journal of the Atmospheric Sciences ( Research article - 63:1650-1657 ) ( 2006 )
  research article (.pdf)      arXiv: physics/0404094   
finite element geometry
Numerical study of quadrupole magnetic traps for neutral atoms: Anti-Helmholtz coils and U-chip
Hyun Youk
Canadian Undergraduate Physics Journal ( Research article - 3: 13-18 ) ( 2005 )
  research article (.pdf)   
quadrupole field